Sample Data API

Sample Data API#

napari_flim_phasor_plotter.sample_data.load_seminal_receptacle_image()#

Load a seminal receptacle FLIM single image from a .sdt file.

This image was published in: Wetzker, Cornelia. (2019). Example sdt raw FLIM images of NAD(P)H autofluorescence in Drosophila melanogaster tissues [Data set]. https://doi.org/10.1038/s41598-019-56067-w

Returns:

list_of_tuples_of_images_and_metadata – A list of tuples, each tuple containing an image and its metadata. The first tuple contains the raw FLIM image with dimensions (ut, t, z, y, x) and metadata. The second tuple contains the intensity image with dimensions (t, z, y, x) and metadata. Time and z dimensions are all of length 1.

Return type:

List[LayerDataTuple]

napari_flim_phasor_plotter.sample_data.load_hazelnut_image()#

Load a hazelnut FLIM single image from a .ptu file.

Returns:

list_of_tuples_of_images_and_metadata – A list of tuples, each tuple containing an image and its metadata. The first tuple contains the raw FLIM image with dimensions (ut, t, z, y, x) and metadata. The second tuple contains the intensity image with dimensions (t, z, y, x) and metadata. Time and z dimensions are all of length 1.

Return type:

List[LayerDataTuple]

napari_flim_phasor_plotter.sample_data.load_hazelnut_z_stack()#

Load a hazelnut FLIM z-stack image from a folder with individual .ptu files as slices from the stack.

Returns:

list_of_tuples_of_images_and_metadata – A list of tuples, each tuple containing an image and its metadata. The first tuple contains the raw FLIM image with dimensions (ut, t, z, y, x) and metadata. The second tuple contains the intensity image with dimensions (t, z, y, x) and metadata. Time dimension has length 1.

Return type:

List[LayerDataTuple]

napari_flim_phasor_plotter.sample_data.load_lifetime_cat_synthtetic_single_image()#

Load a synthetic single image of a cat FLIM image.

Different parts of the cat have different lifetimes. The lifetime values are:

  • 0.8 ns for ears, tale, feet and face

  • 2 ns for body and eyes

  • a mixture of 0.8 ns and 2 ns for arms, nose and inner ears (60% amplitude for 0.8 ns and 40% for 2 ns)

Returns:

list_of_tuples_of_images_and_metadata – A list of tuples, each tuple containing an image and its metadata. The first tuple contains the raw FLIM image with dimensions (ut, t, z, y, x) and metadata. The second tuple contains the intensity image with dimensions (t, z, y, x) and metadata. Time and z dimensions are all of length 1.

Return type:

List[LayerDataTuple]

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